PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07641.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 299aa    MW: 34871.4 Da    PI: 8.4425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07641.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT eE +++  a + + ++   +W ++a++++ g+t ++++  ++ 
       KHN07641.1 26 EWTREENKKFESALAIYDKDtpdRWLRVAAMLP-GKTVYDVIKQYRE 71
                     6********************************.********99986 PP

2Myb_DNA-binding42.31.8e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
       KHN07641.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2992276IPR017884SANT domain
SMARTSM007172.2E-82375IPR001005SANT/Myb domain
CDDcd001671.18E-62672No hitNo description
PfamPF002492.0E-62671IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-112679IPR009057Homeodomain-like
PROSITE profilePS5129419.353119175IPR017930Myb domain
SuperFamilySSF466893.09E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.7E-11123169IPR009057Homeodomain-like
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
CDDcd001673.15E-8126170No hitNo description
PfamPF002495.7E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFETPHQTC FMSNSSWFSQ ESHYTEWTRE ENKKFESALA IYDKDTPDRW LRVAAMLPGK  60
TVYDVIKQYR ELEEDVCEIE AGRIPVPGYP ISSFTLKMVD NQCYDACRKK PATLRSSDQE  120
RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKLSGGK  180
DNKRRPSIHD ITIVNLTSDQ EKPLLLNDES HMTFEQQKLT SMPKVQLEWI NHHDNGSRMV  240
VNPNYDMFMS PSSGISSKTL KLQGQDFYEC AFHETYAKLK NSGFRTTSRD FNKEGIHAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1727971181RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312000.0KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601964.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_006601965.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_006601966.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_006601963.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B2PE120.0A0A0B2PE12_GLYSO; Transcription factor MYB1R1
STRINGGLYMA18G03430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-88MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]